Source: python-mhcseqs
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends:
 debhelper-compat (= 14),
 dh-sequence-python3,
 pybuild-plugin-pyproject,
 python3-all,
 python3-mhcgnomes (>= 3.41.0) <!nocheck>,
 python3-pytest <!nocheck>,
 python3-setuptools,
Standards-Version: 4.7.4
Testsuite: autopkgtest-pkg-pybuild
Homepage: https://github.com/pirl-unc/mhcseqs
Vcs-Browser: https://salsa.debian.org/med-team/python-mhcseqs
Vcs-Git: https://salsa.debian.org/med-team/python-mhcseqs.git

Package: python3-mhcseqs
Section: python
Architecture: all
Depends:
 ${python3:Depends},
 python3-mhcgnomes (>= 3.41.0),
Description: Python library for MHC protein sequence curation
 The major histocompatibility complex (MHC) encodes cell-surface proteins
 that present peptide antigens to T cells. In humans these proteins are
 called human leukocyte antigens (HLA). Class I proteins are expressed on
 nearly all nucleated cells and primarily present intracellular peptides;
 class II proteins are mainly expressed by professional antigen-presenting
 cells and primarily present peptides derived from extracellular proteins.
 .
 mhcseqs downloads and curates MHC protein sequences from IMGT/HLA
 and IPD-MHC, supplements them with selected UniProt and GenBank
 records, and decomposes class I and class II proteins into their
 binding-groove and supporting domains. It can handle full-length
 proteins, signal-peptide-stripped deposits, and common sequence fragments.
 .
 This package provides the Python 3 library and bundled reference data.

Package: mhcseqs
Architecture: all
Depends:
 ${python3:Depends},
 python3-mhcseqs (= ${binary:Version}),
Description: MHC protein sequence curation and binding-groove extraction
 The major histocompatibility complex (MHC) encodes cell-surface proteins
 that present peptide antigens to T cells. In humans these proteins are
 called human leukocyte antigens (HLA). Class I proteins are expressed on
 nearly all nucleated cells and primarily present intracellular peptides;
 class II proteins are mainly expressed by professional antigen-presenting
 cells and primarily present peptides derived from extracellular proteins.
 .
 mhcseqs downloads and curates MHC protein sequences from IMGT/HLA
 and IPD-MHC, supplements them with selected UniProt and GenBank records,
 and decomposes class I and class II proteins into their binding-groove and
 supporting domains. It can handle full-length proteins,
 signal-peptide-stripped deposits, and common sequence fragments.
 .
 This package provides the mhcseqs command-line program.
